Mercurial > repos > public > sbplib_julia
annotate src/SbpOperators/readoperator.jl @ 768:7c87a33963c5 operator_storage_array_of_table
Add some notes, delete functions that won't be needed
author | Jonatan Werpers <jonatan@werpers.com> |
---|---|
date | Wed, 14 Jul 2021 23:40:10 +0200 |
parents | 210d3f58bd56 |
children | d0c1d0b4da52 |
rev | line source |
---|---|
594
cc86b920531a
Change the readoperator function to use the .toml format
Jonatan Werpers <jonatan@werpers.com>
parents:
340
diff
changeset
|
1 using TOML |
601
b05f542b2e8f
Export relevant functions and move export of read_D2_operator to readoperator.jl
Jonatan Werpers <jonatan@werpers.com>
parents:
600
diff
changeset
|
2 |
764
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
3 export read_stencil_set |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
4 export get_stencil_set |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
5 |
766 | 6 export parse_stencil |
7 | |
768
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
8 # The read_stencil_set and get_stencil_set functions return the freshly parsed |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
9 # toml. The generic code in these functions can't be expected to know anyhting |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
10 # about how to read different stencil sets as they may contain many different |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
11 # kinds of stecils. We should how ever add read_ and get_ functions for all |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
12 # the types of stencils we know about. |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
13 # |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
14 # After getting a stencil set the user can use parse functions to parse what |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
15 # they want from the TOML dict. I.e no more "paths". |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
16 # Functions needed: |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
17 # * parse stencil |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
18 # * parse rational |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
19 # |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
20 # maybe there is a better name than parse? |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
21 # Would be nice to be able to control the type in the stencil |
249
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
22 |
768
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
23 # TODO: Control type for the stencil |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
24 # TODO: Think about naming and terminology around freshly parsed TOML. |
249
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
25 |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
26 """ |
767
210d3f58bd56
Make signature of read_stencil_set conform to signature of get_stencil_set
Jonatan Werpers <jonatan@werpers.com>
parents:
766
diff
changeset
|
27 read_stencil_set(fn; filters) |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
28 |
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
29 Picks out a stencil set from the given toml file based on some filters. |
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
30 If more than one set matches the filters an error is raised. |
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
31 |
764
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
32 The stencil set is not parsed beyond the inital toml parse. To get usable |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
33 stencils use the `parse_stencil` functions on the fields of the stencil set. |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
34 """ |
767
210d3f58bd56
Make signature of read_stencil_set conform to signature of get_stencil_set
Jonatan Werpers <jonatan@werpers.com>
parents:
766
diff
changeset
|
35 read_stencil_set(fn; filters...) = get_stencil_set(TOML.parsefile(fn), filters...) |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
36 |
764
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
37 """ |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
38 get_stencil_set(parsed_toml; filters...) |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
39 |
764
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
40 Same as `read_stencil_set` but works on already parsed TOML. |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
41 """ |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
42 function get_stencil_set(parsed_toml; filters...) |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
43 matches = findall(parsed_toml["stencil_set"]) do set |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
44 for (key, val) ∈ filters |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
45 if set[string(key)] != val |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
46 return false |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
47 end |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
48 end |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
49 |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
50 return true |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
51 end |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
52 |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
53 if length(matches) != 1 |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
54 throw(ArgumentError("filters must pick out a single stencil set")) |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
55 end |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
56 |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
57 i = matches[1] |
d34b515b0ae7
Add functions for reading stencil sets
Jonatan Werpers <jonatan@werpers.com>
parents:
655
diff
changeset
|
58 return parsed_toml["stencil_set"][i] |
655
ec7490fb4404
Start sketching the toml format and needed functions
Jonatan Werpers <jonatan@werpers.com>
parents:
637
diff
changeset
|
59 end |
597
98cd99237176
Add a function for reading a stencil directly from the a file
Jonatan Werpers <jonatan@werpers.com>
parents:
596
diff
changeset
|
60 |
768
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
61 """ |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
62 parse_stencil(toml) |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
63 |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
64 Accepts parsed toml and reads it as a stencil |
7c87a33963c5
Add some notes, delete functions that won't be needed
Jonatan Werpers <jonatan@werpers.com>
parents:
767
diff
changeset
|
65 """ |
766 | 66 function parse_stencil(toml) |
67 check_stencil_toml(toml) | |
68 | |
69 if toml isa Array | |
70 weights = Float64.(parse_rational.(toml)) | |
71 return CenteredStencil(weights...) | |
72 end | |
73 | |
74 weights = Float64.(parse_rational.(toml["s"])) | |
75 return Stencil(weights..., center = toml["c"]) | |
76 end | |
77 | |
78 function check_stencil_toml(toml) | |
79 if !(toml isa Dict || toml isa Vector{String}) | |
80 throw(ArgumentError("the TOML for a stecil must be a vector of strings or a table.")) | |
81 end | |
82 | |
83 if toml isa Vector{String} | |
84 return | |
85 end | |
86 | |
87 if !(haskey(toml, "s") && haskey(toml, "c")) | |
88 throw(ArgumentError("the table form of a stencil must have fields `s` and `c`.")) | |
89 end | |
90 | |
91 if !(toml["s"] isa Vector{String}) | |
92 throw(ArgumentError("a stencil must be specified as a vector of strings.")) | |
93 end | |
94 | |
95 if !(toml["c"] isa Int) | |
96 throw(ArgumentError("the center of a stencil must be specified as an integer.")) | |
97 end | |
98 end | |
99 | |
594
cc86b920531a
Change the readoperator function to use the .toml format
Jonatan Werpers <jonatan@werpers.com>
parents:
340
diff
changeset
|
100 function parse_rational(str) |
cc86b920531a
Change the readoperator function to use the .toml format
Jonatan Werpers <jonatan@werpers.com>
parents:
340
diff
changeset
|
101 expr = Meta.parse(replace(str, "/"=>"//")) |
603
fbff4009c08a
Add tests for parse_rational()
Jonatan Werpers <jonatan@werpers.com>
parents:
602
diff
changeset
|
102 return eval(:(Rational($expr))) |
249
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
103 end |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
104 |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
105 function pad_tuple(t::NTuple{N, T}, n::Integer) where {N,T} |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
106 if N >= n |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
107 return t |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
108 else |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
109 return pad_tuple((t..., zero(T)), n) |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
110 end |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
111 end |
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
112 |
340
29df39a7b568
readoperator.jl: Fix path to operators
Jonatan Werpers <jonatan@werpers.com>
parents:
333
diff
changeset
|
113 sbp_operators_path() = (@__DIR__) * "/operators/" |
249
7cb4492ccd60
Refactor package SbpOperators
Vidar Stiernström <vidar.stiernstrom@it.uu.se>
parents:
diff
changeset
|
114 export sbp_operators_path |