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annotate diffOp.jl @ 168:45840a8127d6 boundary_conditions

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Fix typos and add NormalDerivative
author Jonatan Werpers <jonatan@werpers.com>
date Tue, 21 May 2019 14:20:20 +0200
parents 89b63bdf1ea8
children 24ee4def7ffb
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1 abstract type DiffOp end
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2
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3 # TBD: The "error("not implemented")" thing seems to be hiding good error information. How to fix that? Different way of saying that these should be implemented?
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4 function apply(D::DiffOp, v::AbstractVector, i::Int)
2
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5 error("not implemented")
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6 end
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7
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8 function innerProduct(D::DiffOp, u::AbstractVector, v::AbstractVector)::Real
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9 error("not implemented")
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10 end
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11
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12 function matrixRepresentation(D::DiffOp)
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13 error("not implemented")
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14 end
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15
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16 function boundaryCondition(D::DiffOp,b::BoundaryIdentifier,type)::(Closure, Penalty)
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17 error("not implemented")
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18 end
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19
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20 function interface(Du::DiffOp, Dv::DiffOp, b::BoundaryIdentifier; type)
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21 error("not implemented")
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22 end
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23
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24 abstract type Closure end
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25
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26 function apply(c::Closure, v::AbstractVector, i::Int)
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27 error("not implemented")
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28 end
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29
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30 abstract type Penalty end
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31
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32 function apply(c::Penalty, g, i::Int)
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33 error("not implemented")
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34 end
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35
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36 abstract type DiffOpCartesian{Dim} <: DiffOp end
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37
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38 # DiffOp must have a grid of dimension Dim!!!
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39 function apply!(D::DiffOpCartesian{Dim}, u::AbstractArray{T,Dim}, v::AbstractArray{T,Dim}) where {T,Dim}
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40 for I ∈ eachindex(D.grid)
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41 u[I] = apply(D, v, I)
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42 end
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43
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44 return nothing
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45 end
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46
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47 function apply_region!(D::DiffOpCartesian{2}, u::AbstractArray{T,2}, v::AbstractArray{T,2}) where T
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48 apply_region!(D, u, v, Lower, Lower)
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49 apply_region!(D, u, v, Lower, Interior)
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50 apply_region!(D, u, v, Lower, Upper)
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51 apply_region!(D, u, v, Interior, Lower)
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52 apply_region!(D, u, v, Interior, Interior)
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53 apply_region!(D, u, v, Interior, Upper)
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54 apply_region!(D, u, v, Upper, Lower)
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55 apply_region!(D, u, v, Upper, Interior)
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56 apply_region!(D, u, v, Upper, Upper)
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57 return nothing
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58 end
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59
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60 # Maybe this should be split according to b3fbef345810 after all?! Seems like it makes performance more predictable
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61 function apply_region!(D::DiffOpCartesian{2}, u::AbstractArray{T,2}, v::AbstractArray{T,2}, r1::Type{<:Region}, r2::Type{<:Region}) where T
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62 for I ∈ regionindices(D.grid.size, closureSize(D.op), (r1,r2))
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63 @inbounds indextuple = (Index{r1}(I[1]), Index{r2}(I[2]))
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64 @inbounds u[I] = apply(D, v, indextuple)
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65 end
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66 return nothing
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67 end
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68
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69 function apply_tiled!(D::DiffOpCartesian{2}, u::AbstractArray{T,2}, v::AbstractArray{T,2}) where T
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70 apply_region_tiled!(D, u, v, Lower, Lower)
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71 apply_region_tiled!(D, u, v, Lower, Interior)
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72 apply_region_tiled!(D, u, v, Lower, Upper)
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73 apply_region_tiled!(D, u, v, Interior, Lower)
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74 apply_region_tiled!(D, u, v, Interior, Interior)
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75 apply_region_tiled!(D, u, v, Interior, Upper)
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76 apply_region_tiled!(D, u, v, Upper, Lower)
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77 apply_region_tiled!(D, u, v, Upper, Interior)
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78 apply_region_tiled!(D, u, v, Upper, Upper)
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79 return nothing
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80 end
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81
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82 using TiledIteration
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83 function apply_region_tiled!(D::DiffOpCartesian{2}, u::AbstractArray{T,2}, v::AbstractArray{T,2}, r1::Type{<:Region}, r2::Type{<:Region}) where T
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84 ri = regionindices(D.grid.size, closureSize(D.op), (r1,r2))
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85 # TODO: Pass Tilesize to function
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86 for tileaxs ∈ TileIterator(axes(ri), padded_tilesize(T, (5,5), 2))
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87 for j ∈ tileaxs[2], i ∈ tileaxs[1]
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88 I = ri[i,j]
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89 u[I] = apply(D, v, (Index{r1}(I[1]), Index{r2}(I[2])))
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90 end
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91 end
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92 return nothing
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93 end
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94
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95 function apply(D::DiffOp, v::AbstractVector)::AbstractVector
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96 u = zeros(eltype(v), size(v))
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97 apply!(D,v,u)
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98 return u
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99 end
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100
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101 struct NormalDerivative{N,M,K}
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102 op::D2{Float64,N,M,K}
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103 grid::EquidistantGrid
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104 bId::CartesianBoundary
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105 end
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106
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107 struct Laplace{Dim,T<:Real,N,M,K} <: DiffOpCartesian{Dim}
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108 grid::EquidistantGrid{Dim,T}
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109 a::T
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110 op::D2{Float64,N,M,K}
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111 # e::BoundaryValue
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112 d::NormalDerivative
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113 end
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114
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115 function apply(L::Laplace{Dim}, v::AbstractArray{T,Dim} where T, I::CartesianIndex{Dim}) where Dim
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116 error("not implemented")
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117 end
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118
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119 # u = L*v
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120 function apply(L::Laplace{1}, v::AbstractVector, i::Int)
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121 uᵢ = L.a * apply(L.op, L.grid.spacing[1], v, i)
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122 return uᵢ
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123 end
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124
129
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125 @inline function apply(L::Laplace{2}, v::AbstractArray{T,2} where T, I::Tuple{Index{R1}, Index{R2}}) where {R1, R2}
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126 # 2nd x-derivative
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127 @inbounds vx = view(v, :, Int(I[2]))
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128 @inbounds uᵢ = L.a*apply(L.op, L.grid.inverse_spacing[1], vx , I[1])
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129 # 2nd y-derivative
118
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130 @inbounds vy = view(v, Int(I[1]), :)
129
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131 @inbounds uᵢ += L.a*apply(L.op, L.grid.inverse_spacing[2], vy, I[2])
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132 return uᵢ
49
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133 end
99
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134
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135 # Slow but maybe convenient?
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136 function apply(L::Laplace{2}, v::AbstractArray{T,2} where T, i::CartesianIndex{2})
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137 I = Index{Unknown}.(Tuple(i))
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138 apply(L, v, I)
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139 end
135
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140
154
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141 struct BoundaryOperator
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142
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143 end
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144
168
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145 struct BoundaryValue{N,M,K}
154
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146 op::D2{Float64,N,M,K}
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147 end
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148
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149 function apply(e::BoundaryValue)
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150
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151 end
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152
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153 function apply_adjoint(e::BoundaryValue)
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154
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155 end
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156
168
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157
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158
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159 function apply_transpose(d::NormalDerivative, v::AbstractArray, I::Integer)
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160 u = selectdim(v,dim(d.bId),I)
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161 return apply_d(d.op, h, u, region(d.bId))
154
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162 end
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163
168
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164 # Not correct abstraction level
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165 # TODO: Not type stable D:<
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166 function apply(d::NormalDerivative, v::AbstractArray, I::Tuple{Integer,Integer})
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167 i = I[dim(d.bId)]
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168 j = I[3-dim(d.bId)]
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169 N_i = d.grid.size[dim(d.bId)]
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170
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171 r = getregion(i, closureSize(d.op), N_i)
154
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172
168
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173 if r != region(d.bId)
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174 return 0
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175 end
154
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176
168
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177 if r == Lower
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178 # Note, closures are indexed by offset. Fix this D:<
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179 return d.op.dClosure[i-1]*v[j]
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180 elseif r == Upper
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181 return d.op.dClosure[N_i-j]*v[j]
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182 end
154
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183 end
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184
135
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185 """
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186 A BoundaryCondition should implement the method
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187 sat(::DiffOp, v::AbstractArray, data::AbstractArray, ...)
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188 """
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189 abstract type BoundaryCondition end
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190
145
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191 struct Dirichlet{Bid<:BoundaryIdentifier} <: BoundaryCondition
135
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192 tau::Float64
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193 end
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194
145
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195 struct Neumann{Bid<:BoundaryIdentifier} <: BoundaryCondition
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196 end
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197
168
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198 function sat(L::Laplace{2}, bc::Neumann{CartesianBoundary{1,R}}, v::AbstractArray{T,2} where T, g::AbstractVector, i::CartesianIndex{2}) where R
145
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199
135
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200 # Hi * e * H_gamma * (d'*v - g)
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201 # e, d, H_gamma applied based on bc.boundaryId
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202 end
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203
168
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204 function sat(L::Laplace{2}, bc::Dirichlet{CartesianBoundary{1,R}}, v::AbstractArray{T,2} where T, g::AbstractVector, i::CartesianIndex{2}) where R
135
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205 # Hi * (tau/h*e + sig*d) * H_gamma * (e'*v - g)
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206 # e, d, H_gamma applied based on bc.boundaryId
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207 end
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208
168
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209 # function apply(s::MyWaveEq{D}, v::AbstractArray{T,D}, i::CartesianIndex{D}) where D
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210 # return apply(s.L, v, i) +
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211 # sat(s.L, Dirichlet{CartesianBoundary{1,Lower}}(s.tau), v, s.g_w, i) +
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212 # sat(s.L, Dirichlet{CartesianBoundary{1,Upper}}(s.tau), v, s.g_e, i) +
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213 # sat(s.L, Dirichlet{CartesianBoundary{2,Lower}}(s.tau), v, s.g_s, i) +
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214 # sat(s.L, Dirichlet{CartesianBoundary{2,Upper}}(s.tau), v, s.g_n, i)
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215 # end