view +scheme/bcSetup.m @ 958:72cd29107a9a feature/poroelastic

Temporary changes in multiblock.DiffOp. Change traction operators in Elastic2dvariable to be true boundary operators. But adjoint FD conv test fails for dirichlet BC so need to debug!
author Martin Almquist <malmquist@stanford.edu>
date Wed, 05 Dec 2018 18:58:10 -0800
parents 76efb6a7b466
children 93489ddb73e8 c70131daaa6e ba7e442ea639
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% function [closure, S] = bcSetup(diffOp, bc)
% Takes a diffOp and a cell array of boundary condition definitions.
% Each bc is a struct with the fields
%  * type     -- Type of boundary condition
%  * boundary -- Boundary identifier
%  * data     -- A function_handle for a function which provides boundary data.(see below)
% Also takes S_sign which modifies the sign of S, [-1,1]
% Returns a closure matrix and a forcing function S.
%
% The boundary data function can either be a function of time or a function of time and space coordinates.
% In the case where it only depends on time it should return the data as grid function for the boundary.
% In the case where it also takes space coordinates the number of space coordinates should match the number of dimensions of the problem domain.
% For example in the 2D case: f(t,x,y).
function [closure, S] = bcSetup(diffOp, bcs, S_sign)
    default_arg('S_sign', 1);
    assertType(bcs, 'cell');
    assert(S_sign == 1 || S_sign == -1, 'S_sign must be either 1 or -1');

    verifyBcFormat(bcs, diffOp);

    % Setup storage arrays
    closure = spzeros(size(diffOp));
    gridData = {};
    symbolicData = {};

    % Collect closures, penalties and data
    for i = 1:length(bcs)
        [localClosure, penalty] = diffOp.boundary_condition(bcs{i}.boundary, bcs{i}.type);
        closure = closure + localClosure;

        [ok, isSymbolic, data] = parseData(bcs{i}, penalty, diffOp.grid);

        if ~ok
            % There was no data
            continue
        end

        if isSymbolic
            symbolicData{end+1} = data;
        else
            gridData{end+1} = data;
        end
    end

    % Setup penalty function
    O = spzeros(size(diffOp),1);
    function v = S_fun(t)
        v = O;
        for i = 1:length(gridData)
            v = v + gridData{i}.penalty*gridData{i}.func(t);
        end

        for i = 1:length(symbolicData)
            v = v + symbolicData{i}.penalty*symbolicData{i}.func(t, symbolicData{i}.coords{:});
        end

        v = S_sign * v;
    end
    S = @S_fun;
end

function verifyBcFormat(bcs, diffOp)
    for i = 1:length(bcs)
        assertType(bcs{i}, 'struct');
        assertStructFields(bcs{i}, {'type', 'boundary'});

        if ~isfield(bcs{i}, 'data') || isempty(bcs{i}.data)
            continue
        end

        if ~isa(bcs{i}.data, 'function_handle')
            error('bcs{%d}.data should be a function of time or a function of time and space',i);
        end

        b = diffOp.grid.getBoundary(bcs{i}.boundary);

        dim = size(b,2);

        if nargin(bcs{i}.data) == 1
            % Grid data (only function of time)
            assertSize(bcs{i}.data(0), 1, size(b));
        elseif nargin(bcs{i}.data) ~= 1+dim
           error('sbplib:scheme:bcSetup:DataWrongNumberOfArguments', 'bcs{%d}.data has the wrong number of input arguments. Must be either only time or time and space.', i);
        end
    end
end

function [ok, isSymbolic, dataStruct] = parseData(bc, penalty, grid)
    if ~isfield(bc,'data') || isempty(bc.data)
        isSymbolic = [];
        dataStruct = struct();
        ok = false;
        return
    end
    ok = true;

    nArg = nargin(bc.data);

    if nArg > 1
        % Symbolic data
        isSymbolic = true;
        coord = grid.getBoundary(bc.boundary);
        dataStruct.penalty = penalty;
        dataStruct.func = bc.data;
        dataStruct.coords = num2cell(coord, 1);
    else
        % Grid data
        isSymbolic = false;
        dataStruct.penalty = penalty;
        dataStruct.func = bcs{i}.data;
    end
end