Mercurial > repos > public > sbplib_julia
annotate src/Grids/grid.jl @ 1344:760a4a1ec4b7 refactor/grids
Add 2D tests for dissipation operators and fix bug
author | Jonatan Werpers <jonatan@werpers.com> |
---|---|
date | Mon, 15 May 2023 22:37:55 +0200 |
parents | fa3695f634de |
children | 08f06bfacd5c |
rev | line source |
---|---|
212
aa17d4d9d09e
Export some functions from AbstractGrid and move documentation to docstrings
Jonatan Werpers <jonatan@werpers.com>
parents:
211
diff
changeset
|
1 """ |
1257
198ccda331a6
Remove range dim as a type paratmeter on Grid as it is already encoded in T if available
Jonatan Werpers <jonatan@werpers.com>
parents:
1256
diff
changeset
|
2 Grid{T,D} |
1222 | 3 |
1331
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
4 A grid with coordinates of type `T`, e.g. `SVector{3,Float64}`, and dimension |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
5 `D`. The grid can be embedded in a higher dimension in which case the number |
1336
52087a6c0682
Mention grids as grid functions
Jonatan Werpers <jonatan@werpers.com>
parents:
1334
diff
changeset
|
6 of indices and the number of components of the coordinate vectors will be |
1331
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
7 different. |
212
aa17d4d9d09e
Export some functions from AbstractGrid and move documentation to docstrings
Jonatan Werpers <jonatan@werpers.com>
parents:
211
diff
changeset
|
8 |
1336
52087a6c0682
Mention grids as grid functions
Jonatan Werpers <jonatan@werpers.com>
parents:
1334
diff
changeset
|
9 All grids are expected to behave as a grid function for the coordinates. |
52087a6c0682
Mention grids as grid functions
Jonatan Werpers <jonatan@werpers.com>
parents:
1334
diff
changeset
|
10 |
1331
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
11 `Grids` is top level abstract type for grids. A grid should implement Julia's interfaces for |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
12 indexing and iteration. |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
13 |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
14 ## Note |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
15 |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
16 Importantly a grid does not have to be an `AbstractArray`. The reason is to |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
17 allow flexible handling of special types of grids like multiblock-grids, or |
ed3ea0630825
Add some docs for Grid
Jonatan Werpers <jonatan@werpers.com>
parents:
1330
diff
changeset
|
18 grids with special indexing. |
1222 | 19 """ |
1257
198ccda331a6
Remove range dim as a type paratmeter on Grid as it is already encoded in T if available
Jonatan Werpers <jonatan@werpers.com>
parents:
1256
diff
changeset
|
20 abstract type Grid{T,D} end |
1222 | 21 |
1262
5e28ae42caf2
Clean up IteratorSize and eltype for EquidistantGrid, Grid, and ZeroDimGrid
Jonatan Werpers <jonatan@werpers.com>
parents:
1257
diff
changeset
|
22 Base.ndims(::Grid{T,D}) where {T,D} = D |
5e28ae42caf2
Clean up IteratorSize and eltype for EquidistantGrid, Grid, and ZeroDimGrid
Jonatan Werpers <jonatan@werpers.com>
parents:
1257
diff
changeset
|
23 Base.eltype(::Type{<:Grid{T}}) where T = T |
1333
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
24 |
1334
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
25 """ |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
26 coordinate_size(grid) |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
27 |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
28 The lenght of the coordinate vector for the given grid. |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
29 """ |
1333
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
30 coordinate_size(::Type{<:Grid{T}}) where T = _ncomponents(T) |
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
31 coordinate_size(g::Grid) = coordinate_size(typeof(g)) # TBD: Name of this function?! |
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
32 |
1334
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
33 """ |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
34 component_type(grid) |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
35 |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
36 The type of the components of the coordinate vector. |
47e309eac131
Add docs for coordinate_size and component_type
Jonatan Werpers <jonatan@werpers.com>
parents:
1333
diff
changeset
|
37 """ |
1333
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
38 component_type(::Type{<:Grid{T}}) where T = eltype(T) |
79a2193da5c1
Implement coordinate_size() and component_type() types
Jonatan Werpers <jonatan@werpers.com>
parents:
1332
diff
changeset
|
39 component_type(g::Grid) = component_type(typeof(g)) |
1222 | 40 |
1264
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
41 """ |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
42 refine(g::Grid, r) |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
43 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
44 `g` refined by the factor `r`. |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
45 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
46 See also: [`coarsen`](@ref). |
1264
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
47 """ |
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
48 function refine end |
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
49 |
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
50 """ |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
51 coarsen(g::Grid, r) |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
52 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
53 `g` coarsened by the factor `r`. |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
54 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
55 See also: [`refine`](@ref). |
1264
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
56 """ |
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
57 function coarsen end |
1222 | 58 |
212
aa17d4d9d09e
Export some functions from AbstractGrid and move documentation to docstrings
Jonatan Werpers <jonatan@werpers.com>
parents:
211
diff
changeset
|
59 """ |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
60 boundary_identifiers(g::Grid) |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
61 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
62 Identifiers for all the boundaries of `g`. |
1222 | 63 """ |
1233
3924c1f6ec6d
Fix empty function defs
Jonatan Werpers <jonatan@werpers.com>
parents:
1222
diff
changeset
|
64 function boundary_identifiers end |
1264
7a67935d3f3a
grid.jl: Fix function defs and add todos for documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1262
diff
changeset
|
65 |
1222 | 66 """ |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
67 boundary_grid(g::Grid, bid::BoundaryIdentifier) |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
68 |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
69 The grid for the specified boundary. |
1222 | 70 """ |
1233
3924c1f6ec6d
Fix empty function defs
Jonatan Werpers <jonatan@werpers.com>
parents:
1222
diff
changeset
|
71 function boundary_grid end |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
72 # TBD: Can we implement a version here that accepts multiple ids and grouped boundaries? Maybe we need multiblock stuff? |
1222 | 73 |
1269
20f42cf0800c
Add test for Grid and make them pass. Start implementing eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1266
diff
changeset
|
74 """ |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
75 eval_on(g::Grid, f) |
1222 | 76 |
1330
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
77 Lazy evaluation `f` on the grid. `f` can either be on the form `f(x,y,...)` |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
78 with each coordinate as an argument, or on the form `f(x̄)` taking a |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
79 coordinate vector. |
5f05a708d730
grid.l: More documentation
Jonatan Werpers <jonatan@werpers.com>
parents:
1324
diff
changeset
|
80 |
1343
fa3695f634de
More clean up of todos and notes
Jonatan Werpers <jonatan@werpers.com>
parents:
1342
diff
changeset
|
81 If the goal is a concrete array `map(f,g)` can be used instead. |
1269
20f42cf0800c
Add test for Grid and make them pass. Start implementing eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1266
diff
changeset
|
82 """ |
1343
fa3695f634de
More clean up of todos and notes
Jonatan Werpers <jonatan@werpers.com>
parents:
1342
diff
changeset
|
83 eval_on(g::Grid, f) = eval_on(g, f, Base.IteratorSize(g)) |
1273
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
84 function eval_on(g::Grid, f, ::Base.HasShape) |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
85 if hasmethod(f, (Any,)) |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
86 return LazyTensors.LazyFunctionArray((I...)->f(g[I...]), size(g)) |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
87 else |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
88 return LazyTensors.LazyFunctionArray((I...)->f(g[I...]...), size(g)) |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
89 end |
7fab13c07412
Allow multi-argument functions in eval_on
Jonatan Werpers <jonatan@werpers.com>
parents:
1272
diff
changeset
|
90 end |
1222 | 91 |
1270
dcbac783e4c1
Factor out functions for getting the type and number of components in a type
Jonatan Werpers <jonatan@werpers.com>
parents:
1269
diff
changeset
|
92 _ncomponents(::Type{<:Number}) = 1 |
dcbac783e4c1
Factor out functions for getting the type and number of components in a type
Jonatan Werpers <jonatan@werpers.com>
parents:
1269
diff
changeset
|
93 _ncomponents(T::Type{<:SVector}) = length(T) |